Scaffold Ga0209350_1012556

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1012556
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2701
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006290	Metagenome / Metatranscriptome	377	Y
F006394	Metagenome / Metatranscriptome	374	Y
F034587	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_10125563	F006290	GAG	MIAAADPRPMSSAPVDGTPVQLFVVAGSVIASFWSEERCRETFGAGDYRAGWYLLDDDAIELEHPMGWEPLTHACARFENETVPLMPEPVLS
Ga0209350_10125564	F006394	N/A	MAAKNPTDEPDPAPFKVHLLTRAGRLMRARSEPVRAFATKDEAVRFAGRQLGDHYAVYHKDRKIWPPP
Ga0209350_10125566	F034587	N/A	ATNYALLVYAAIFVISAEYFSRTDFARNSLGIIAIAVFVIHWYVIFVFQRAIDKFRSRLYWVYTTYFNREEQAGLELPLGPPPSWGQLEVAAGLVLVSFVGFVLTAIYLWSVR