Scaffold Ga0209350_1007685

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1007685
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3612
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008656	Metagenome / Metatranscriptome	330	Y
F025586	Metagenome / Metatranscriptome	201	N
F099945	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_10076853	F099945	GGAG	MKALAISMVAGAALCSLMSVPASAMPMSNLAAAASDLALGQSVRYVRHPYRYRLSRSSYYASGAGYYGYRAGYPGYARDCYGRGFGPGSPCYP
Ga0209350_10076855	F008656	GAGG	MDPPIGPAGDDASSNLGAAGADMSTDLTPRIALIALVAFLASPAHAQPAPGQAPPNAVSIEQSAVFEVTPVTGALKETAQKGQQLVWRARRSPNDRRFALTDMSVAFLRSEAPTEVKITFAGHVSAFGWRPESDPQLEVIVRTRGGASIYFWNFAVSVRCADSNRPLPPLSQVVPNDIAANLFNNVGTVEISEYREPNAPILTARQCPS
Ga0209350_10076856	F025586	AGGAGG	MRTIAVVLLALLGTALTGASANAGAWCANYLRGVSNCGYSSANQCWATVRGLGDGFCAPNPYPGTAYGSGGSWNTPKSRKRYQRSY