Scaffold Ga0209350_1007620

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1007620
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3631
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000321	Metagenome / Metatranscriptome	1304	Y
F021825	Metagenome / Metatranscriptome	217	Y
F105673	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_10076204	F105673	AGGAG	MQCRRIIGERDGYWNIKGWGHFVADSWLNCLHFLRFAWYHFEQKVVPLRCRS
Ga0209350_10076205	F021825	N/A	MKKDYQRCLDKLAATAPETKSALIRSLLPGIEAALNSGKRLKAIWEALREEGLQMSYHSFHKTVSRSRKVKKPTATSILGKQPKPSEARGLRETEVETVEERDPLANLKLLEENRPGFHWRSAKSLNALVHGTEDSNDKNKW
Ga0209350_10076208	F000321	GGAG	VRLLSALDKLLRDKPRYMGELSTSINDALLAVDLNTVELVNLQSRQKQTGRETQVVILRRLRKLIHHVAQKRKCSMNQLVNSALLAYYSKTGEAKLKRPAKGRGGSRRTYDTMSELERRELHQMLSGLAAVQPLSADVEEPDGTYYEYDRNLKATVKVTPDGERTPVVQLEAQFARPPQKGSHKTAHEGMIP