Scaffold Ga0209350_1002997

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1002997
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6371
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000259	Metagenome / Metatranscriptome	1441	Y
F011746	Metagenome / Metatranscriptome	287	N
F088654	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100299712	F011746	GGAGG	MRRQGSSLGLVLVTSFLVGCSERQLTAPPNVSDLAASAEQLPAQTACGHVSGAFVFTRFQFTSQTTAMGEGTVEGDLSGGFSAQYYDIEQRGNGVIHMRAHHTITRSTGTIMTSDEILLLPDQDPAMGLPNSRLDVIGGTDAYDGATGLLHTHGQVNLVTLAGSIQYKGQVCVP
Ga0209350_10029973	F000259	AGG	MPPPNKRLKLAGGDRSKGNGVLCARGHELSFNDTPSVGRVARSLSAIR
Ga0209350_10029977	F088654	AGGCGG	MSSPNRTRALAFFLGLLLVGAPIDIGRAQSTWDRYKPGTIRGVIQQNDSSIRANSPGKLPSWVVTGNQFPTLARVVYRGDSRPVDSIRAEIVRRWGVSFLRDSSMARRFRREYLFQEGQTLLWLPVQDTVASYFPRELHTGQEIALYVLWLGAYYAGDDITWAFVVTEFDAGSAKR