Scaffold Ga0209350_1001355

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1001355
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10832
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005236	Metagenome / Metatranscriptome	407	Y
F012564	Metagenome / Metatranscriptome	279	N
F030713	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100135510	F012564	N/A	IADALSAGDTSAKRLSRYQSSRKMFADVIGQHAHYTSTYALSNNWLIKRLNRRALSKMQKNPKLMKKALEITAGVFTKKPGLIEQARIGGILP
Ga0209350_10013552	F005236	AGCAG	MGFLSIMGKILIGLAMLTLPVAVSLILVFSEALTTIGVAISLGASIFVFFCGIYAGFLGVKYERLQQKFESFVNPLRIRPNPVNLIKAICPIDHQQVVFVHVSPHRDDARPDGLDIFLGSCGHEVHRGEIEIEQPARSASS
Ga0209350_10013555	F030713	GAG	MAEKKRLPPWEEAKLVFKMQEETRKRKLLEKDMQQRQGWAKRVGPNTSDELEENRKRLRALQKRIEDEDDR