Scaffold Ga0209350_1001271

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1001271
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11307
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001944	Metagenome / Metatranscriptome	613	Y
F031217	Metagenome	183	N
F086941	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100127110	F086941	GAG	VRRTRLLLVVVLGLAAGLAVVLRRRTPTAGTPEPRPAPLAVEPPKPALQADAEGSYVPGYEFTVNRFRFTGFSLRPDAVVTFAQTGTGAEQPMACLDVLIRADTVHLRCDDPQVGTVTIDGRFRTRVATNRLDTAVLAAVVTVRSGSGEILYRARDSFKWHPRDSGEPGT
Ga0209350_100127113	F001944	GGA	VFLLALLIFVGIPALTVIKVARLRAARPQSLSADAIARLEALERGVQDLQKELAETHERLDFTERLLTKAREER
Ga0209350_100127118	F031217	AGG	MRTALVVAKLPNMRATPFPAAVCALALLPGPVSGQAPSSAREQLVWHWFGGCAGNDSLFLEFHVDGKLVYSATFPICHVRRADVRPEPQQRVLTFHFDAAPHRFGAQYRASEPEPITGNVWEADRRGTAVVLGVSFATAERVLLNTRHAARPDSPARSEWIRGLELITRPVRRR