Scaffold Ga0209350_1001064

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1001064
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12691
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009132	Metagenome / Metatranscriptome	322	N
F016129	Metagenome / Metatranscriptome	249	N
F031428	Metagenome	182	N
F032621	Metagenome	179	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100106412	F016129	GAG	LGVEEEAQPKKSGSRRYIETLLGWHGEDSAGSNLYQTTLLTSIIEYGIILFFGIWIVSEYFANIYEQQYFGSFDPVFLVVVLMIASAYGFTRLISTIRTVLKPPKKTSRPEDDY
Ga0209350_10010642	F031428	N/A	MGKRRGPLITGSVAMNAVRFGDSDLAKILRGALVIVAAGMIILPAYFNYEIWKRGINPVVSMAISLQLFAIGIVLLILAIGKERLAPKSQPQ
Ga0209350_10010644	F009132	GAGG	MVKRKIVDSSPEDLSNLQRLVGPENVLAHCAGVNYQVYVTDTRLLVGKRFATGEKFMNVPTASINTLELITKSLLPPLTFAVLGAIASFLIWWFPGTRMLPLPLFPYDVALLAGLVVFVGSLVVAWWRVGIAVLRIRVNDSRDPITVKLVSASKAEAVFKALKG
Ga0209350_10010649	F032621	N/A	MEVGLLRALSSTGSNLAVQTAKEGFIGRLPPASLVYWIRLGFGVLAGVIYNLAGFGSLGVGLGTLSMITVGIGVYSVSIFLVKNLLGYGPEVLKGPNKHVTIGMGSYIIWMIFTTILLYTVLNPHPS