Scaffold Ga0209350

Basic Information
Taxon OID	3300026277 Open in IMG/M
Scaffold ID	Ga0209350_1000872 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209350_1000872 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14577
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (57.14%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14577

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (57.14%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006299	Metagenome / Metatranscriptome	376	Y
F006466	Metagenome	372	Y
F010312	Metagenome	305	N
F012762	Metagenome	277	Y
F013280	Metagenome / Metatranscriptome	272	Y
F014110	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100087212	F012762	AGGAG	LTAVAFRRLPAVLEDDPSLGNITSFPTLLHARASFSFDINPESLQKALVSALASLQAKPKSREITLADRNGYSDGRLVFKIGIGNRDSFDTLDSKEEERVLDRIENRGPFNTLDLAFHLHYAIDDGRRHKIHEDHYVLRLVFQPGRVEFLMHHLKGVRRVEPDELVRFIIQGLNVELARNRYGEIELETVDIT
Ga0209350_100087215	F010312	GGCGG	LASPKKELMMLRVFRLTLPAALLVSLTWMTLFTDSARQAVINSLGANANIIIFILGLFLVVGLYWVMGIYERKILYENHRTRPAF
Ga0209350_100087217	F014110	AGG	LEAINFKLKSGSKLVGKQKEQQTVDLGKLPAELGPAVDFLRKHVKDLKGRVLTKGNQIQVEGLKHKEVKLLLHKFLRHKGLDNHRVLSQSGILEIVPPHVTTHPRHDQGTTPPAGATMPYLFPGAPTPVSSGKKSRKKT
Ga0209350_100087218	F006299	GAG	LTVSAEIVSKQTPEVVEFNQLKSRTSTEALTELVKELGIVYVTALTRQGCSGCETQKPLFKTLAERMNRENPEKVRFQSIHVNYQTGNKQESWNSKRIFGHAAYPTYMIHVKSHVGPLEIYRSVYPPIEELEKQIKESFELAESYKAEAETASGLESEKL
Ga0209350_10008726	F006466	N/A	LLLIVWGKIASDIYKLLEPDSALLLFQFMLVIFLMEASTTALTFDSTMRGLKGKNDDISALARMRVTKWARAQLFSLGKLTTAAFALSLGLLILGSFVSVSVDQIAFSGVLVLAAVVAILILLTYRREPVETRITAL
Ga0209350_10008729	F013280	N/A	LNTVRLLFWSAVAYALLLVLVRGIFPSESTPTLSLTGVPLIVIVVMIARDLGRKSTSPTVSRPIATTGGFRGNPVQFLSGQFRVAANASNSYFEDVVRARLKELLIIKVALETGLDNETVRRLLSDPGHAPRLLEDESLYRILYGPTPQGGLARMNMIAEAIDLIGAWKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209350_1000872

Overview

Ecosystem & Geography

Associated Families

Sequences