Scaffold Ga0209350_1000508

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1000508
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21653
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003985	Metagenome	458	Y
F012766	Metagenome / Metatranscriptome	277	N
F027130	Metagenome / Metatranscriptome	195	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100050814	F027130	GGAGG	VDVHCNCSLETREENRMLGKENSKENKLNEYFRRRCSNYERFLCDRVWECALCAKQAGKVETLALPTVTKVEALRRR
Ga0209350_100050815	F012766	GGAGG	MEALREEEVLQLEEDLLRRLEEKLTPLVERAAVDAAKIAMHQLRLDLMNHISRHEDTIRRLKRTESALNHIPTSR
Ga0209350_100050823	F003985	N/A	MTTREPASTTNPSKANGLLLNRYSRTFLLLLSGINLALGLVFYIYPPFVVSYWPWPVKELAVRFLGAIFLAIAFGCWSAVHAKRWQRAKILVLVGGTFFGITGIVSLVRGINVSGDASTWVWTGYFLIAAAGCLLLLQRYGWHRRQAETPTSTMPRGARLFFGIQTSVVGIFGIMMLLVPGLAQQEFWPWKVYVSTLQTFAALFLATCLATGWATQQKDPERIKVLLPLDAVFPSLALLAVAIGWSVIVEESPSRLVTGVWVGLYSFVAVGSTILYFVLTRRSR