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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026277 Open in IMG/M |
| Scaffold ID | Ga0209350_1000490 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22261 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (73.08%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Angelo Coastal Reserve, California, USA | |||||||
| Coordinates | Lat. (o) | 39.73825 | Long. (o) | -123.6301 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011479 | Metagenome / Metatranscriptome | 290 | Y |
| F013070 | Metagenome | 274 | Y |
| F017116 | Metagenome | 242 | Y |
| F020766 | Metagenome / Metatranscriptome | 222 | Y |
| F069900 | Metagenome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209350_100049010 | F013070 | AGG | LRVAKGDLIASFFLAVFVTGFFGLLYNINAASGWPVLTTIGLLSFLIMAYILQNQRKNQRKWEKRPITFPNPEGGGILGLYTERPWYAELAELGRRYKRKTHKSQEKKR |
| Ga0209350_100049017 | F011479 | GAG | LVSDSVTETMSKILGTDTWKAINFFFDVKGIAREPESFATLLDKLFGYTSNVLQKKIGETLLGKVGAPQQSSSGLDFRQILRLAKAKFPSSRLQTSLDPKQLI |
| Ga0209350_100049018 | F017116 | AGGTGG | MALDIVETFETFDLILILVAFAIFARLAIRGKSLGNFRFQLSIFLLIWVLSEIPHIAESLGLIVNSGYDDIGLYLHALSMGVFSLFVGWRSIRFATLHPTPASSVLPIPKEPAKGIKG |
| Ga0209350_100049019 | F020766 | AGCAGG | MVDLVTGGIALFAIMVAAGIVPLIMGVKAKARSLRILSLLLGLFAVVHGFYHLASGYQQDFLADAVFEPISLILLVGLGAYYSKVAVV |
| Ga0209350_100049023 | F069900 | AGG | MLCCNYPNCKQVTPPFQQRVARYQIGPLSKQPKTASTKMTSFTGVFLLVFSVLVVVLDTANFFAIGISFFIMLIGIMLVMVGAMGGFEKKPDPTSTHTEVLREIVKVRCKYCGALNLETSQKCSNCGAHL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |