Scaffold Ga0209350_1000368

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1000368
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27432
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (67.57%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000186	Metagenome	1702	Y
F000611	Metagenome / Metatranscriptome	987	Y
F007303	Metagenome / Metatranscriptome	353	Y
F007573	Metagenome	348	Y
F027466	Metagenome / Metatranscriptome	194	N
F040019	Metagenome	162	N
F082489	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100036812	F000611	AGTAG	MQTNMNFPTYVFATVNPGRSTKVVDELKHNSQIDIIAPVTGRWDLVLRLKPNTPHNIYQTVKEIREISDIRTTDTHSGFDGMQPSKKLESQMALGFSLLNVQHTSVENTIKQLSNISGFVEACTVPGQFDIVALWQARTSEDIVKASFEKVNHLEGIFSSETLLAYAPIFKA
Ga0209350_100036817	F007303	GAG	MGTKEFLDFQQTIRDLERQVDILLREAATNGPSQRTKELTEKVYILAERAKQIRLQDARSQSTTNQSILEKLPKQFDEDFGKFKGLTTFVEWVRKQHYNATGHNLGRTYGSFGSKEISPGQHHGKLLIDTLEIRCDACGNESPQSERRDYPIHVLLHDRGQWEVCTGQSDCECQGYGGKGVRIGVDLSTERVGKGRA
Ga0209350_100036822	F040019	N/A	MSFQVLFHERDVAGFCAECNLRLRTDKTIGRRTPEYYAEFTRQVEASYPDRIQRIFLKMNSVSDAKRVYPVVRRLGFRTKQSSPMLHARLVMVETTRGQAVVLIEKLRERGMQVALQDDLHSPPP
Ga0209350_100036824	F007573	GGA	MSFELEQLRGLAEKYAYHDASTNGVYPRLIWERRNRSPVSRIDDAVEFLGKWKALRFKGGGSAFRRICTNWLRKNLTDLQHLRGRVLFSLAPEDFQRILDITTSFRDCSAPPTTFGKALHFFLPETIMLWDQAIVRNTYKLRPYPESFVSYQRFGWKLLHHVTRNKSVRVIRQLERDHAKSIGYFEPMTMILDHLAFYPKLSARAVAALGGSSQAFSNDLSS
Ga0209350_100036828	F000186	N/A	MEQELAFKLQVDGIHYQTQVEIPVTTADFYFPLETRPLLVFVDGRVHLGLAQTAKDEEIRSLLRKRGYRILALNYDSYSDTRRDQLYEQLLEDLGRK
Ga0209350_100036833	F027466	GGAG	LAVVSFRVPDSLREEMERVSIDWPDVLRRIVEERILLEKRRRAAVRMDASRKKTVGVRFNSTREIRKMRDAR
Ga0209350_10003689	F082489	GAG	MSFELEQLREAAEKYSHHDAGPHALWPSLVRGRRSKSLVARLEDAVEFLGKWKALRFKGGGRVFRRICTNWLRKNLTDLRRLQGRVLYSLAPVDFQSVFEISSSFRDCGAPPTTFGKALHFFLSETVMLWDQAIVRNRYKLRSDPESFVSYQRFGWKLLHHVTRGKTVNVLRQLERPRKTHRLHRTDDYDP