Scaffold Ga0209350_1000264

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1000264
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32998
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (82.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004288	Metagenome / Metatranscriptome	445	Y
F007165	Metagenome / Metatranscriptome	356	Y
F050281	Metagenome	145	Y
F091706	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100026411	F004288	AGGA	VGTLFPAREPAMNGAHFDGRVEKRLPTSVPVYLASLEEPRSRERTLTENVSSRGVRVISQRFWQSGEESLITPLTGEFRQVGRVIYCLPTAGDRFCVGVEFSDRTVKWGEHSSD
Ga0209350_10002642	F007165	AGGAG	VDLMAPPDRRKFQVRCDAGSSGRFEAGTDTLSVRVGQRMRAGKEEEMWDSVQILCKEQSDGSLTVEVIVCHPDWEEAKTVAAIHSRPQDDGTATPGLKCDLRASGPDELQRAGGA
Ga0209350_100026423	F091706	AGGA	MKADSFGEIFLWNREMDCLIRVLQRRESSGILSKHEMRVYWVQLEEVRARLNADFAGRTATSERADQSRLKRQRTAWERKTPESNQKDLPQ
Ga0209350_100026426	F050281	GGA	MIYRRQFSSEQIEKIARTKDALGRLRANPADAVAVLALYETCGRELQEVGVRYFGKNQLGKKAVLNLLVAVVSRAWSYDPQSMSASEWVSRVADAEARKLWEALDAGGSGDQLTRRAM