Scaffold Ga0209350_1000260

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1000260
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33329
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000469	Metagenome / Metatranscriptome	1102	Y
F004288	Metagenome / Metatranscriptome	445	Y
F032054	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100026024	F000469	GGAG	MGHARVGLALARCIATAALVLFLTPQSKAQTVDVSGRYQCAQAKMRGKVIPCKAAPLILKNDGHFELRGWEGSYLVNGQWVELSDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS
Ga0209350_10002605	F032054	GAGG	MRTLFDILKKDRKGTFQWLETVKDIETAKARVLQLSSESPEEFVVFRGTDLQVVATSRAMQTNTEVLREFPQQRLQVFAD
Ga0209350_10002606	F004288	GGAG	MNGAHRRRPNNRYLDGRIEKRLPTSVPVYLASLEEPRSRERTLTENVSPHGARVISQRFWQSGEASLISRLTGEFRQIGRVIYCLPTAGDRFCVGVEFQGRTVNWGEQGVIP