Scaffold Ga0209350_1000239

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1000239
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35285
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (78.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002063	Metagenome / Metatranscriptome	597	Y
F003702	Metagenome / Metatranscriptome	473	Y
F003732	Metagenome / Metatranscriptome	471	Y
F097955	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100023918	F003732	GGGGG	MSTKEKVLIVWLLVVMAASFVFHHFWVCAVYALGRAVALNIILLPGLAKLTAGIWAAHLL
Ga0209350_100023925	F002063	GGAGG	MIAMLQLTILVLITIFAVAAASGLHWLFLKAAFLIMRPATARKIPVRAELVRGTAQLTRAFASRR
Ga0209350_100023930	F003702	AGGAG	MKRHAVSVVMSLAAAVISGTVFLLALFDQYALVEMAASIITALQVFFLSSAIGDLLEKKKETNRTRNSAAVLVTIFLVAFYSFRKYFH
Ga0209350_10002396	F097955	N/A	MTENPVRSLVVLARYSSHSFILLCCAILVLEGCSARRRPDIPWATAVMVRPTAQLRSAEENSASEDPLPDLRFELPTVPGRLIGLRPVPPRPRNGTASNATAGNDPEKPEAPTIAPQLTPQESAVAQQQTNESLNIAERNLGAARGKTLTAAQTDLVSKIRSFIKDAREAAQITDWSRARSLAKKAQVLSEELASSL