Scaffold Ga0209350_1000208

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1000208
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38406
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (67.74%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004601	Metagenome / Metatranscriptome	431	Y
F046289	Metagenome / Metatranscriptome	151	Y
F063506	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100020821	F004601	GAG	MLVGLSVQLRPVAGETVAVRATVPVNPLTGATVIVEAAVPPTNVLAVVGLALTEKSVTV
Ga0209350_100020823	F046289	N/A	MLAVLLVHDRAEVWLAPSTMLFGVRVQVRPAGDTEEVRPTVPVNPLTGATVMVEVAAMPTLTLAVVGLALTEKSVTMNVTVAV
Ga0209350_100020824	F004601	GAGG	MLAGVRVHVRPAGDTEEVNATVPVNPLTGATVIVEVAAVPAVVVTEVGLAVTVKSVTM
Ga0209350_100020825	F004601	N/A	VQVKPAGATELVSATVPVNPFTGATVMVDVPAMLTLVVILTGDAVTVKSVTV
Ga0209350_100020826	F004601	AGAAG	MLLGVRVQVKPAGDMELASATVPVNPLTGATVIVDAAAVPTVVVTAVGLAATVKSWTAKVTVAV
Ga0209350_100020830	F004601	AGAAG	MLVGVRVQVSPAGDTEDVRATVPVNPCTGATVMVEAPAALASAVTLVGLAVTVKSLTVTVTVAE
Ga0209350_100020831	F046289	N/A	VLVQDRVEPWLAPRTILVGARVHVNPAGLTLDVSATVPVNPFTGATVMVEVAAVPALTATVVGLAVTEKSVTV
Ga0209350_100020835	F046289	AGG	VLLVHDNAEVWLAPRTMLAGVRVQVRPAGETEEVRATVPVKPFTGATVIVEVAATPTLTLAVVGLAVTVKSCTVKVTVAV
Ga0209350_100020837	F046289	N/A	VAVVEEHDKLEVWLAPRTMLAGVRVHVRPAGATEEVRATVPVNPLTGATVIVEVAAVPAVVVTDVGLAVTLKSTIL
Ga0209350_100020838	F004601	N/A	VQVNPVAGDTEEVRATVPVNPWSGATVIVEVPAVPALAVTLVGEAVTEKSLMVTVTVAV
Ga0209350_100020839	F046289	AGG	VEVWDAPRTMLAGVRVQVSPAGETDDVRATVPVKPFTGATVMVEVAATPAFAAAVVGLAVTVKSVTV
Ga0209350_100020846	F046289	GAG	VEVWEAPRTILVGDRVHVKPAGETALVSATVPVNPLTGATVIAEVPAVPTVVVTEVGLAATVKSFTVTVTVAL
Ga0209350_100020856	F063506	GAGG	VHDRVDVPDPPAILVEDRLQDRLVELVVTARLTVPVNPLSGAIVTVEVAATPAFAVTLVGLALMVKSGALVT