NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209350_1000157

Scaffold Ga0209350_1000157


Overview

Basic Information
Taxon OID3300026277 Open in IMG/M
Scaffold IDGa0209350_1000157 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45162
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (84.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009096Metagenome / Metatranscriptome323Y
F016576Metagenome / Metatranscriptome246Y
F099023Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209350_100015723F016576AGGAGGMQKFIKLIALILLLGIPDCLYADRAHDLAKVASKQKAVIGCNPASLTTQTCHAQFPTGCTDSAHKYDAYLNFLKNQVPGAASASTAFLNGTDFKSFEDKIPKTLGSSNHAKSAPALANLGEGNIVTVIAFLYFVEDTGKGAGGKPSIGETTNCKLQLPDSYDFHIGLGFDPALAQQILKNKPQPVFGHPTEMDKTSVVAEMTPHTRGPKWTFARVNSLQGQQVKVVGQLMVDNTHLNANDDCAFPGALASCWRSTVWEVHPVTRFFVCNLKNNQVCDQNSPNSAWTSLKNVP
Ga0209350_100015729F009096GAGGMVPLASTTVSKQRSERRISVRLPLKVRGRDAHGFAFEEDTSSENLCRNGAAFVTRFDVAIGSDLEIRIPLSQYGSRRAQPEKFGAAANGNRSSAARMNERDFATHGRVVHVCDCESGREKLVGVQFTGPRFQRVFRSESAA
Ga0209350_100015743F099023GGAGGMQPRRRIEPVESLAEQADYRVAQRKIPRLKSFDARIERREPLPVQIYLATLEEPRTRERTVTEDVSPHGARVLSKRCWQPDEVPLVTPLMGEFPKHARIVYCDPQPKGGYCVGIQFDAPSFKWHV
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