Scaffold Ga0209350_1000125

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1000125
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50299
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (79.59%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005666	Metagenome / Metatranscriptome	393	Y
F007493	Metagenome / Metatranscriptome	350	Y
F026411	Metagenome / Metatranscriptome	198	Y
F027294	Metagenome / Metatranscriptome	195	Y
F041398	Metagenome / Metatranscriptome	160	Y
F080432	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100012525	F026411	AGG	MKGQEQKDSAAPMGTSPAMECRAEFIFYARNQSRKLGSVEVLGDYTCDFRRPDWAHRWTDWNSGRNQYLNLFLCAKHARELGLL
Ga0209350_100012526	F027294	GGAGG	MRVFRGFAIALMLALISLGIFILYNSMARRSAAAADSVIAGAVLFSLALTLLYYISRPTI
Ga0209350_100012527	F080432	AGGAGG	VEIQKGERWRCQNPVCGSEILVTTSSRARGGSNPRCSCGEIMKKPYTQPGLRPFESEVEARVKLEASRD
Ga0209350_100012528	F041398	AGGAG	MTKSRTLAAFAMFVLSAAVAVFSGAIPVPFLNAGKHSLPAIQSNGAVTLIADGGDPQPPPTPLPWLV
Ga0209350_100012530	F007493	AGGTGG	VIGTTTALIGAAVLLVLILVWVRGQSASRHLPAVMDEWLTGQDDLPEACPPEFVSKIFSSRDSEFISQLESVDLKRLFLRERNAVALLWVQQTAATIRRIMRHHLEASRLSADIKFAMEARIFLQYAQLRLICGTLFLLIGLAGLERLHWMALRADKLTQRIGNVLREFESGARSREMDGVQS
Ga0209350_100012541	F005666	GGAG	MKAVMVRISLFVAALAAMCVADVARAQAPLEPTQMSPRTMFYMIWRGVPPSEVRKTNALLALWDDPDFAPVRSAMAAGMLGSSDEKSTQPKLTPEQVQEFAGLLENSFTLGYWSEPTRRNLSTGAAVVDAKTPAWNGMFFVYDRTGKEMLLTKAVLRMRAEEKEAPRLSQVAIAGVQVLKVEGKSGATYWAEHGKYAVSAGEKLVMEDLLSRLDGKVAAGGASLAQSAAYQEAQANLSGGLLEFFLRIPDLKNLANDSKAGMFQMRPLLDAARLDAVHLIGGHVTFEGAKTHVQAAILGEAVPGTPFDIWSAGERAPASLALTPADAVSYTSAQLNFQGIYDTVKRVASAAFPQAQQGNVNLVDAMAQQKLGMPVADALGLLSGEFASMQTSPSLDTANQVYFFGIRKKPETLKLMRTVFSDQITSERNEGDVTFVKISLGGKQATEGVAQWNFFNLAVTPDMILGASKMDTLREALARRGGGTGGAGLASVPQFAAERQQFPEKLIGMSYFDFQKVDWAAARDRWVAESKKSSVVKSMNSSGQSAAVTSVNEWLLQMNPQVISRHLHRSLSVSWKDSKGIHWDQWVE