Scaffold Ga0209350

Basic Information
Taxon OID	3300026277 Open in IMG/M
Scaffold ID	Ga0209350_1000076 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209350_1000076 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	62452
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (74.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

62452

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (74.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000232	Metagenome / Metatranscriptome	1513	Y
F001032	Metagenome / Metatranscriptome	800	Y
F001745	Metagenome / Metatranscriptome	643	Y
F004288	Metagenome / Metatranscriptome	445	Y
F014602	Metagenome	261	Y
F094319	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100007630	F014602	GGAG	MIDSWTKQSPSGKTVTFKIEGDRKSGFVYSAKMDGRDIKEIKGFREELTREGVEVMFANYVAGK
Ga0209350_100007631	F000232	N/A	MKHRRENRRAPQTHPSASAVPSYHRILVKHGLIEKNLPISDAYEVFLKVGADPEVEKLRRKVELGNKMKHVPALHLATAMALQGMTKQELEALKLRIEKKRV
Ga0209350_100007632	F094319	N/A	MTVRESSSSEDGVRYACQEPDCFVTYSRSDGYFLSTQNQSVLKRCAIPPHQYCVHDRYPMYLLEVQLEQPGFRLWRCPHCNMSRLGGELMDHDTSTASDVFGRKNGTI
Ga0209350_100007633	F004288	GGAG	MNGRIEKRFPTSVPVYLASLDEPRARERTFTENISSQGARVISQRSWRSGEGSLISPLTEEFPQVGRVIYCVPKAGDRFCVGVEFQGRTVKWGEQDVIP
Ga0209350_100007644	F001032	GAGG	VGLGEMVAMLEKRNCRMGSCSRSAITTLDRQALCLNHFLLRCYEKLEGFDPRGRKFSAEPVDLVSMRAFIEECSRKALDVSLQSENLSNLQRGRLLDILLWAGELFLLLRAPRLTLVQSAASSEVPLSASGASQGF
Ga0209350_100007645	F001745	GGAGG	MASSAYYPNKTQGVAYPYGQAALLKTQPPSHGKSGVPPLTALSIEFVAKPQEAHRVEVAIPTAVAGALKDVTGFAGCLVMVSDQEARLVTVVTLWSGHDRTKSCNQNVRWVNALLAPYLDHRLRMQTMVAHLPVLPMNQPETVAAGESAAMQDLESADETVCVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209350_1000076

Overview

Ecosystem & Geography

Associated Families

Sequences