Scaffold Ga0209350_1000045

Overview

Basic Information

• Taxon OID: 3300026277
• Scaffold ID: Ga0209350_1000045
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 76428
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (78.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005917	Metagenome / Metatranscriptome	386	Y
F006948	Metagenome / Metatranscriptome	361	Y
F015194	Metagenome / Metatranscriptome	256	Y
F039731	Metagenome / Metatranscriptome	163	Y
F077702	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209350_100004513	F005917	GGAG	MLVRPHLPGYRWFHTFRNATIRTGVYVGVCLTLVFSAWLVIANRAPFLERFALERNIAAAAILGFLAAVPIFRFLRLPGHLLASSLIGWLIFSLSYRVLCLLFRDLSNWHSTPQVFMQGAVVYMILTTLSWIATTIWRARESHASHPKHHAS
Ga0209350_10000452	F077702	AGG	MDTQIKGFADSMYEQFFVESAVSTRADTTNLLKERTTKRTAKTPVKESQINGIVKFQVRHIERCLAARLESYERAYEETGKVPTEEELEEILAELKTVGDLQVKHSSSFIDNFLRARRAQVQCDPEQSLMEGCAEAHDRVLRTWKNWGEKIRIKEVAPAKIKAAAKPPAQTVAETQPIQDEAVPMEKQRSNRTLFAYYWCFFKRLGNECNRTWRGELAAALLTATGAYLLIHRVSAVAWTSFKSEGLSMVIAVWSIALWHVLRTPWLLHKEASSAGGGIRRVHWGHGLFGIVVLAGVLAGSGLYARKQLAKPIAPVMAAAYVEPKNSLRKRTLSLANDLNVFLGERWSKRPPGHGPDTLKYDQATLDLYMKFYKSRMVGILQELQDKGLDTGLLGAPGGAPSRFLLPDEIRQLRDLAYHLDEKGSVVKF
Ga0209350_10000455	F006948	GGAGG	VRLRFPHFTSLILGASLVFASGASAQRPDTLMPEQSIAKGKQILSDLINALGGPGYLEVRESQCEGRRVLFGHNGEPVGNIGFVDYRRYPDQDRTEYIGKGRHTILPYLIGIDGLDWSHGGIVITLYNRDHGWTFDRSGVNELPATSISDFQEQVKRNVDNLLRLRLKEPGMAIRFGGNDTLDLKQVDWVEITDAQERVFRLAVDRSTHLLVRSSVTTKDEETQQINEDVTIYSNFHLKDSVWTPLQVSREHNGRRAVQIFYETCKYNPGFPDQLFDQSSLSKQGGQSLAKKGKN
Ga0209350_100004554	F015194	AGGAGG	MNFPQTNLDLLAARVQKLEAANHRWKFVNALLLLSGVSVLLMGAKPADRLQPNVIRAGSVEAQEFILKDETGHVYARLSLNPSVPKPTQKGRTYLVPSDTIPGGEAALQFYNEKGEVLWTAPSLGGAQFVPAR
Ga0209350_100004561	F039731	AGGAG	MRRKVLAWTPFLGSLLLLSLAATPYSRTADAALISARLTLLIVLSILVLRERWRNRHESPGKAAPAGSDVGDRFLQRCRRWYRGE