NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209847_1021738

Scaffold Ga0209847_1021738


Overview

Basic Information
Taxon OID3300026276 Open in IMG/M
Scaffold IDGa0209847_1021738 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1348
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameArctic
CoordinatesLat. (o)68.6137Long. (o)-149.3144Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055242Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209847_10217381F055242N/AMKNELEMTLSSRRPLTESVVREQISALSQFAGGLMCPDKASETEPIKAPFDPADLSGPVQWLAKPLGQFLYRQGNPIQLAGEMWNRTLPPASRFSSPPFSNYWTGRFDGRWALRVGIEMVLDFVSEMFRVTGADFALLTTGTDRKAKNQGPLSHSYQGHDLAMGVPGLYWVNLFSDDLAEWLGLSTMPKELGALTPLDCGGWLLKFCES

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