NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209847_1014382

Scaffold Ga0209847_1014382


Overview

Basic Information
Taxon OID3300026276 Open in IMG/M
Scaffold IDGa0209847_1014382 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1730
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameArctic
CoordinatesLat. (o)68.6137Long. (o)-149.3144Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007671Metagenome / Metatranscriptome347Y
F052223Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0209847_10143821F052223N/ASVFSGNELLQLTENTEDVSDGAGGAVNEFYDAMIKNYPYTEPLVDSFIAHTKADQNLGHADAFLEMCKSVPPMTRREVNDALNVAKDMAEHLLLFMDGIDTFYANFPVLPRVPCDPLSE
Ga0209847_10143822F007671AGGVTGVPPGGSLGYTEADLQRIVERSIGRPLDSPERICDFLDSYTYLDDWRLNYSIQSVRSSLHAPRITCIDGAVLSYGLLELLFPQTKRALLAIHRRDPAKDEECGHCVTLFWNKEGLIGSFSKSSFPGLGHRPAVYRDAESVATSYARAYITEMKFEPLYFGVTTLEEAAPDLDWRHAGGSLNEISARLQACYAYGFAVE

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