Scaffold Ga0207993_1015866

Overview

Basic Information

• Taxon OID: 3300026270
• Scaffold ID: Ga0207993_1015866
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2428
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025518	Metagenome / Metatranscriptome	201	Y
F033077	Metagenome / Metatranscriptome	178	Y
F049033	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207993_101586610	F033077	N/A	MNQEKEDTTYKVLRLTTEGWTLVDDQAVNLTKQQCDQVLQNLVQMEGINPRDLRAVRDN
Ga0207993_10158662	F049033	GAGG	MSYTKNETALLTLISNINNQFYYIGEDGDDVDQFEIDQLHKFVDQFASEVTISDSQGE
Ga0207993_10158668	F025518	N/A	MQLKKKSVTHYTINPMSEEKLTHYTKTSLREESKLYLPTVREFYPHLDGMLTERIAKYCAIYSKGTDKASIRQAINDFEEVFDQELTQ