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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026270 Open in IMG/M |
| Scaffold ID | Ga0207993_1001837 Open in IMG/M |
| Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8223 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (64.29%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004711 | Metagenome / Metatranscriptome | 427 | Y |
| F011890 | Metagenome | 286 | Y |
| F020448 | Metagenome / Metatranscriptome | 224 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207993_10018372 | F011890 | AGGAG | MKNKILDNLPTLFVIMIVAFSFIMVFNHAYSETQDRVVLINSGKAGGSFNARTQMYKEGLVAAGYNVQFENVGKISQAVKMFKESDQPTVMVYANNQVYKQDLFHTESNFIIAEYQQPLYVCRTNTSKDKTGVLTVAHGKGYDPALLTNLLGDNITLVPYKNSGAMLKGILGGDVDMMVNNQGKSFKYIKSGQGTCEASDVLPTMVATVIGKNIDLQEIRKVIFDITMNLQFIEYHTSRKLVRPSSTWEQELALTQELEKGYAVK |
| Ga0207993_10018373 | F020448 | AGGA | MQSNKLDLHKNTISEFHDNLMVYYDLVKEKQADHEGPFAEAVRHLMLPELVLHEEKIEDRTILRDEENGKPRNWGTKREWRDYMVSKGYNTHNTKMNYVDHNNIPEELFDALNTLPIKHPVFSINIQPPGSVVPSHEDTWRIWYDKNPSLAKKYTFEDTAFFIVFLTPQEIGHSFQCGTTNIKWGAGDVIQMPYYTKHATANAGFTNKILVQCLGIKA |
| Ga0207993_10018378 | F004711 | AGTAG | MARIGRKSTLEWIKEDYSSNPIRFCCEVIGMISNLIASLILMWYSPNPPMFIAYIFFLIATCFLMYGAWSRKSFGFTAMYLVYLGIDGIGFVKTLL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |