Scaffold Ga0207993_1000682

Overview

Basic Information

• Taxon OID: 3300026270
• Scaffold ID: Ga0207993_1000682
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13305
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (89.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F004819	Metagenome / Metatranscriptome	422	Y
F007531	Metagenome / Metatranscriptome	349	Y
F037809	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207993_100068213	F004819	GGAGG	MQFWPKDENPMLDERSARFHGRVMKGDLATLDYVFDQGNRDINVARATNYVTWDYDKDMWCEVDHLMLTFYIKARTTDTREYLEDKINRDVVTLIKGPCYYKSAKVYCTIDMHHPEDESIYDIIKVPKGKRPAPYCVEGKEGDITYHVTLHIQEANPMDLIVYDEEDRGDYFDLHGNNLEKKVKETA
Ga0207993_100068221	F037809	AGGA	MKKLLSILALTMIVACSTPAEANDVADDGKCLDDIKHFNHLWKTTSADQSTKDAAKAKRDEGSSHWAQGNKEECETAYQAAWALID
Ga0207993_10006825	F000302	GGAGG	MVKVMTQDTKDRIRDLERQKIDLEDRLELVGNNLVQMHKIEEEIFEIEDTIAKLTR
Ga0207993_10006827	F007531	GGAG	MFKEVEKKIESFVRAELAGVHRIDFVHGTLYLTLDKPSDCDFIHKEIRKYYKEFINPEGGVNMYAVGDEFAFDFVPEESEAPVFSDEEYSGKEGMMPDDIDKGIWSEFAEDEMFSNMPDDVDTLLNLEAESKRGK