Scaffold Ga0208278_1006172

Overview

Basic Information

• Taxon OID: 3300026267
• Scaffold ID: Ga0208278_1006172
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV259 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3931
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016597	Metagenome / Metatranscriptome	246	N
F023963	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208278_10061724	F016597	GAG	MAGNHGRFPFGSTTGDADYGLFFTPREMELFDNYNEELLGIVAQTGVTYWRIEPDSSDPNSIYGESEIKVTRDPVSLYCWVMLDEPETETNAFTVDVRRRIELYMHKDGLTERDVVPRMGDFVGYDNQYFEILRAGVPNFVYSYPQTKLGVIVRCLSVREGVFDPDRDFVNKEYVGDSENPY
Ga0208278_10061725	F023963	GGAG	MATPSNTHQKSIEFDEVNLFSIDKAVYDWFNTKHATNIKGRTVPVVFGGWERFAQMQDNRQDDSLNRMRDASGMLILPMISIRRGDVTYNTERFIYQQADGSPRVQLSKRVAMSNFDANRRVPFDGPHMYSSSRRRSDAPVMEITTIPWPDFVNIPYTITFWSSYVRHANYFNDRIWQNAYPTDLTYKGYYFYAFIDSGTNENNEENYTDEERIIRSSFTMTVDGYLVKKTDASVTRTSTKMLMSESYMETPKMDTPGHKSIDEILSHDRARAPHKYPDPMPP