Scaffold Ga0208410_1016119

Overview

Basic Information

• Taxon OID: 3300026266
• Scaffold ID: Ga0208410_1016119
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2510
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC1105 virus BpV (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033951	Metagenome	176	Y
F065458	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208410_10161191	F065458	N/A	TEKINEIINEGLKDPKAYYEQSKLDWKKIYQMIPVMYMMNQIEEEKK
Ga0208410_10161192	F033951	N/A	MSAALLGAAVLCCCSSSSTSAGAFFGGFIPGTSQYVLKKMKKLIQIVISLDATPESCENLYKYMKETKGTSAAESAVQSLSENEKTILERVYDIGRGVAPEKICDKSVAYSTIRLFKKVQNAPKGEERQLSVYCNELKDLGNENKDKRHPIYYWDESKKEFIRDREYMKNAFDGKSGPELEGPIINKCMEAGINIR