Scaffold Ga0208410

Basic Information
Taxon OID	3300026266 Open in IMG/M
Scaffold ID	Ga0208410_1002337 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026266 Open in IMG/M

Scaffold ID

Ga0208410_1002337 Open in IMG/M

Source Dataset Name

Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9010
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (88.24%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9010

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (88.24%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: Eastern Tropical North Pacific

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049214	Metagenome / Metatranscriptome	147	N
F075433	Metagenome / Metatranscriptome	119	N
F083393	Metagenome / Metatranscriptome	113	Y
F106168	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208410_100233711	F106168	GAGG	MKLKTQMKNFYKRNKMLSIGITALGAWYVLNRQGMAPSLPSAPVKSATSSAPVARYAYDAYPPVRNEPYTNSSHFFGPADGDPVFYGF
Ga0208410_100233713	F083393	GGAG	MKIVDKIFKTADKHPLLTFAAGSLGIMYLFETYGSINGLGQATFKTSGTEMDDMFRKTGHTGAPAPGTGRWDTVMPSPQGPQVRYDADYHTQPIMMDPMLEQTLMERGKRPVVQSASIRHGYEPQVFAGMRHNL
Ga0208410_100233715	F049214	N/A	MANLNQGYRSGNAFGRLANVSYENGIMGDDVALKPGYLLRIRDTYALVTGVEAMSVDLFFTDTVNVGITAVSSSVATDFDGTHGEALEQYGLASISAYYDLGTSTVAEADKTGNILAPDYDSGFITFKALEPYAGNLYHLCPTLPLQPKYMVKDTGDWHSLNAYPPYDTSNGGLPVGFKGDGTAANTEHIGSVSAKMYLKQPSGVSKHTLDEASDGESARATASETTLEGISGFLDGEMSPLANPNWTFGMIIEHGEASLPAFRMVNDSDEFILDGRCRLVGWKYKILELSQEQLSTLKAKAGGRLRFMYYNPVTYQSSGFLSDYLAV
Ga0208410_10023373	F075433	AGGAG	MSDEIVMAKVNAFANELKEMGVEDFIFAAGSSSGLLAIQYDGDPRGVCFLAMSALMNAMFDSIDNDTGEISHGGREDYGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208410_1002337

Overview

Ecosystem & Geography

Associated Families

Sequences