Scaffold Ga0207991

Basic Information
Taxon OID	3300026264 Open in IMG/M
Scaffold ID	Ga0207991_1000325 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F14-07SV275 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026264 Open in IMG/M

Scaffold ID

Ga0207991_1000325 Open in IMG/M

Source Dataset Name

Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F14-07SV275 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32669
Total Scaffold Genes	60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (61.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

32669

Total Scaffold Genes

60 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (61.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: Eastern Tropical North Pacific

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030885	Metagenome / Metatranscriptome	184	Y
F031657	Metagenome / Metatranscriptome	182	Y
F039346	Metagenome / Metatranscriptome	164	Y
F044590	Metagenome	154	Y
F044731	Metagenome / Metatranscriptome	154	Y
F044732	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207991_100032519	F039346	GAG	MLTSFVITLIECLEIAFITLLISQTKVNKSTITIYASLGLLGGLLSAYFLHDILENYEWLMYAILSSLFFYLFVKNKEVRQHIQRHVDDISQSSSTVLFLTAFFIYGRESFEIFSNLFLNPNASWLAAGLAAFVAVMIYMFARDSKVKVYIFKFGYWAYLVFAIWFGYEALEHLHIL
Ga0207991_10003252	F030885	N/A	MNNITEPSISIIGSTTTDGVALPYNVSMILNDDDQHKAFRKMMSDKFYHKDISIRISKYINEASIHFRNESDVAEFLLLVGE
Ga0207991_100032521	F044731	AGG	MIFEDIYEKYEHLTVELIENEEGSPLEVAGAMMGQAMKLYKMSLSHEDFNSLMTIITHASGLEGDRFIYDDYDTTNETKH
Ga0207991_100032531	F044590	N/A	MIIKINDRVEIRPVGGGILRDGIITSISISKNAELDPAGERGVNVEEFDLYNELPGSICYTDVTFNDEDDESGKSRWAYFGQIKQNE
Ga0207991_100032532	F031657	N/A	MSKNTKKKLHFLYHIEDVGFKMLTESEAKDYKSKHGDVIWNVHKSIDIEPEWFLRHEFKE
Ga0207991_100032545	F044732	AGGAG	MTEHYFVEVIADNGEILRWEALDKEQADFIFKQELAKNGADNCITGKTAGINSNPVHRW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207991_1000325

Overview

Ecosystem & Geography

Associated Families

Sequences