Scaffold Ga0207990_1048911

Overview

Basic Information

• Taxon OID: 3300026262
• Scaffold ID: Ga0207990_1048911
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1180
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005149	Metagenome / Metatranscriptome	410	Y
F033843	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207990_10489112	F005149	AGGA	MKTKCLLCTALTESGQGFYDHLEDVHMMPIRRMRFGDDGRPREESHNECMERFKFNHEEYGTELCWCPDCIGGETLTMVNEVCSKHGRLYIKGEHKNG
Ga0207990_10489114	F033843	GAGG	MKIRKTAYWIVGLLVFFGWCDLVWGQTEKWSGESVTLYTTLAGLSMIDAKQTFMMDEYRSYFDEIEPITYAHEVNPLMGELPTNDRIVAVKLLSGALTFYGLNKMKEVNRKKALTWLNVFYLIVVIHNNSLGLSINL