Scaffold Ga0208408_1022703

Overview

Basic Information

• Taxon OID: 3300026260
• Scaffold ID: Ga0208408_1022703
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2352
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019733	Metagenome	228	Y
F053973	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208408_10227031	F053973	AGG	MKDKFSFGAASVMREVPPGESAVISFNGKAEKVETDWGDKFSYKILIHSHP
Ga0208408_10227032	F019733	N/A	MAKGDTFFLRTKLTSSTDSYVSDNIDISAYTDPARGRVLVVDRSFITFSTDGNGPIVPADIYSSATVTKSMGAQVCSEKQTSLVHLSNNSLFARSNIYATASSATVMSMISQTDSLNPLEFTGGFIVPTDAIHCGIDTGSAWNAELDVGFLFEVHTEKLSLQRIQELLVSLTAN