Scaffold Ga0208408_1020099

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208408_1020099

Scaffold Ga0208408_1020099

Overview

Basic Information
Taxon OID	3300026260 Open in IMG/M
Scaffold ID	Ga0208408_1020099 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2550
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041436	Metagenome	160	Y
F101353	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208408_10200991	F041436	N/A	KKRTLDPDEDSGEVEDWDELVVNNFKIIKIHVGPTYAEDFEDDDDIDGFPFETYNDEGDIADYITRTVQRIKI
Ga0208408_10200992	F101353	N/A	MKSFKQFTEAQITHDTKGFIFSNFDSPALILSPTMIDRVFGQTRVDSWHVTDFSGLKGLKRIEGKKASISVLSEIEPGRVKIFTKGVETGGGYCINLEGSLLVSSTMDVYSSRLEAGRRGVAISSDDYPSLNKDLIKMQDKMWNKYADQNEKKNVSNFKKLGRTLSQKEKGQFVKEWIDNCESILKKNKKAQDELRTVGRAKWSTYNESVVNQIKIKRIYVINDNKFEKFGKNYQLAKGMFTDVLEVTSERMGEIITK

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