NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208408_1010077

Scaffold Ga0208408_1010077


Overview

Basic Information
Taxon OID3300026260 Open in IMG/M
Scaffold IDGa0208408_1010077 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4051
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057690Metagenome136Y
F105147Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208408_10100773F105147N/AMSNKKEWLYEKLNRLVKLVRATEPDQPDDKHLFQPCNIDAHNLLMEVEQRYDEMRPHEIKEIMVEANKIWKFRRKIWNGDVDWNWQSQLDQELEDMLKQGAKIAAIKHYRSECEKETGSTPSLRESKDYVDKLEVNLKQQGVAK
Ga0208408_10100776F057690N/AMVMGKKWYHIKATHSVIGVVRFWLFQENEDDVRKLVIKKKYNNIEWIRQETPPFI

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