NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208896_1070795

Scaffold Ga0208896_1070795


Overview

Basic Information
Taxon OID3300026259 Open in IMG/M
Scaffold IDGa0208896_1070795 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV63 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1032
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000659Metagenome / Metatranscriptome952Y
F010479Metagenome / Metatranscriptome303Y
F021178Metagenome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0208896_10707951F010479GGAGVHEMKTFKQYLKEFAIQSTSDYVFDTPSGHSGSLKIPISGPMFKRIWPDTIRATVFHVTDLSGLKRLKKLEGGKKTISAFFSMMSRYMESGVATSGGVVVEMDADVVVSASSD
Ga0208896_10707952F000659N/AMKTFTQYLEEASKYIVSKNPHDKKWYVMGHVGNNKWMPVSNGFKNKAQAQKWAKSQDKVDIAARGEISSA
Ga0208896_10707953F021178N/AINISFISFSIFLSFAKLKKMENDIKEMLINIIVDHSDITPVPNVNKAWSYLGKSTGGKEKSLIIKDYIDGMEKVMKKHSKVLGALLTDYTKKRIQEPDPDSGDKPMWDELVVNNFKIEKVHVVTGDDPEDWDETDFGLPIKVWGDRGDAADYIIRTVQKIKL

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