Scaffold Ga0208896_1070795

Overview

Basic Information

• Taxon OID: 3300026259
• Scaffold ID: Ga0208896_1070795
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV63 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1032
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000659	Metagenome / Metatranscriptome	952	Y
F010479	Metagenome / Metatranscriptome	303	Y
F021178	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208896_10707951	F010479	GGAG	VHEMKTFKQYLKEFAIQSTSDYVFDTPSGHSGSLKIPISGPMFKRIWPDTIRATVFHVTDLSGLKRLKKLEGGKKTISAFFSMMSRYMESGVATSGGVVVEMDADVVVSASSD
Ga0208896_10707952	F000659	N/A	MKTFTQYLEEASKYIVSKNPHDKKWYVMGHVGNNKWMPVSNGFKNKAQAQKWAKSQDKVDIAARGEISSA
Ga0208896_10707953	F021178	N/A	INISFISFSIFLSFAKLKKMENDIKEMLINIIVDHSDITPVPNVNKAWSYLGKSTGGKEKSLIIKDYIDGMEKVMKKHSKVLGALLTDYTKKRIQEPDPDSGDKPMWDELVVNNFKIEKVHVVTGDDPEDWDETDFGLPIKVWGDRGDAADYIIRTVQKIKL