NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208896_1026720

Scaffold Ga0208896_1026720


Overview

Basic Information
Taxon OID3300026259 Open in IMG/M
Scaffold IDGa0208896_1026720 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV63 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1925
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007550Metagenome / Metatranscriptome349Y
F080151Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0208896_10267201F007550N/ASVICTLSRSRCLKFVKESPYLIKMKKLITLFLLFSCVTVSAASLEMKVMKQKTLPNGNTYGLAGGIYFELTDLEPFIMYKLQYSEDLRKWTDMVHLGTYKMAMTSPYYTWDELPPHKCFFRIVVAW
Ga0208896_10267206F080151N/AMRDMYYVVDEDGLSRMFDVSHDGLEDAIEVANEIGTDVMRERDGETERVWSFEDAGSDEPWDGFNSDAEADGDALASAGFGTDEDYGCYDSGNDDYGCEY
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