Scaffold Ga0208896_1008311

Overview

Basic Information

• Taxon OID: 3300026259
• Scaffold ID: Ga0208896_1008311
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV63 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3984
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015796	Metagenome / Metatranscriptome	252	N
F059066	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208896_100831113	F015796	AGG	MNKQQMKRYDDTRDRVLIREWFKLKGVVLEHGSKYGVDLEGKDYDIEISHLSFDRLWNQWKKENRFRIEIRKRNHYWDGIYNESNTTHFVQLNKSGHELLVYPQDLIMEYSDNEVELGYLRSKGFNLKERTFMSIPFNKGKDVIKRYEI
Ga0208896_100831115	F059066	N/A	MNMKIKNITEEEYNHYFHKWLYYYGGASDVVSLKQYIKDYDSDDYGDIDKYDTGLCPCVMCLDEDIDG