Scaffold Ga0208130_1003018

Overview

Basic Information

• Taxon OID: 3300026258
• Scaffold ID: Ga0208130_1003018
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7528
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034602	Metagenome	174	N
F054105	Metagenome / Metatranscriptome	140	Y
F059070	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208130_100301814	F054105	AGAAG	MGRLCTIIAIYSVGICVKTMATLKQTVNDTHDWSLSRICELCSYGEIENVMNGNALRQEFEEWIVSYNKDSEEEIISLAYIGEGGEYDI
Ga0208130_100301815	F059070	GGA	MKTLGFTKVLLLPLMILVTTMGSSIASPIPPRRSPTSEESTFTRRENPEEEREESQASQTGNDITEALTTLNKILEALVEILSEEKSSPSTQPLEK
Ga0208130_10030186	F034602	N/A	MTNRFKEILPPHTKEEKSYPQLIALGIMLLGILIIDIIGYYHGNMTLLEVLKNL