Scaffold Ga0208130_1000834

Overview

Basic Information

• Taxon OID: 3300026258
• Scaffold ID: Ga0208130_1000834
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15510
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (57.58%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001419	Metagenome / Metatranscriptome	698	Y
F006348	Metagenome / Metatranscriptome	375	Y
F025518	Metagenome / Metatranscriptome	201	Y
F033077	Metagenome / Metatranscriptome	178	Y
F053343	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208130_100083415	F006348	GGAGG	MNKFYIVEKIGFDTKFKTDDEIKELEWKSDNGLGVWSSEGKTEDERISKLFDKVQDYMGVYLTSLSYCNNRPHPLTAFK
Ga0208130_100083419	F001419	GAG	MMYEFDGYDEILKCYEGVTDQHASTSFEVGLMNDLYYQLFREDF
Ga0208130_100083421	F053343	N/A	MVRWWDSKRSGTNLPRQFGLGGYNEYIKRNLSLHSNHHSIMKNPQAHRSTEELKTIVKALSKLSLLNTPEENQRLFDCQQELKKRKREDDFINAHFQVITYS
Ga0208130_100083428	F033077	N/A	MTQDTTYKVMRLTTEGWTELDPLMAVNLTKEQCDAVLQNCINDGIDYRELKAVRDN
Ga0208130_100083432	F025518	N/A	MSEEKLTHYTKTSLREESKLYLPTIREFYPHLDGMLTDRIAKYCAIYSKGTDKASIRQAINDFEEVFDQELTQ