NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208407_1120734

Scaffold Ga0208407_1120734


Overview

Basic Information
Taxon OID3300026257 Open in IMG/M
Scaffold IDGa0208407_1120734 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)814
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058203Metagenome / Metatranscriptome135Y
F066132Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0208407_11207342F066132AGGAMATQFTVNGKDYSHRELNTMYEFFTQVQWDVIDGALDCYAQSQQYEGIEEDTHQVRDAMYSLLRAAY
Ga0208407_11207343F058203N/AMSTLANEILMETIFEEVLEEWFPEFDEETCESIAKTRFESMCQ

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