NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208407_1069866

Scaffold Ga0208407_1069866


Overview

Basic Information
Taxon OID3300026257 Open in IMG/M
Scaffold IDGa0208407_1069866 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1145
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001205Metagenome / Metatranscriptome748Y
F029152Metagenome / Metatranscriptome189Y
F055651Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0208407_10698661F029152N/APDVTDATDLEAVAGKARSDNRVDTANYDRYTAELQIKDACKQLGITTANRTINALSGTLLRNMNQHDRDEIARQLDLNESADTLS
Ga0208407_10698662F001205AGCAGMFKDVIGDWPMHERFILTSCDDKYFDQYFPRFYKTYNEYWCLPIHVHIIDPSHTSIQRLKKLDLSYTHCTTDPAVLKGPYSYLTYCQAQRFILLGHNLLENQSVIVTDVDSYALREPSQQQRHTLASDMAFTEYNRRLMATFCNFHHSKRAQALESAIKMQKLIEDTDTIGVDQLVIKQMFKALPYTNLKHGEWIRHLDVKSEHDLEQHNQCLIYHEKGTRGKNNGIQVQWTDIGL
Ga0208407_10698663F055651GGAMDRYRVIEQFAKQHNWKEGLELGVWVGVTTFWLMKNTVVNMTCVDAWEVQDDNPEYDWQYNKKPVF

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