Scaffold Ga0208407_1038295

Overview

Basic Information

• Taxon OID: 3300026257
• Scaffold ID: Ga0208407_1038295
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1637
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013818	Metagenome / Metatranscriptome	268	Y
F025847	Metagenome	200	Y
F034895	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208407_10382953	F034895	AGG	MTTLLEQLRPEIAEALEIQRDKYDYCITELYESLDNKHLYSELSVGEMRDLILWGDINVHGWDSMDWRFGTKLLKDERYI
Ga0208407_10382954	F013818	GGA	MNMSDSVKKYYEMQQEKIDKESLYLCSEIEKALERIISYSDEDLDDKIFTKIKKPAIKLLKEWHL
Ga0208407_10382955	F025847	GGAG	MKRIYKLFKYWSIAMLFFLLGTFYTYYKIDQRLWNEDILKARDIETRYLNYPTKRTYKSEDLERIIYGK