Scaffold Ga0208407_1006207

Overview

Basic Information

• Taxon OID: 3300026257
• Scaffold ID: Ga0208407_1006207
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4778
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028516	Metagenome	191	Y
F041433	Metagenome / Metatranscriptome	160	Y
F100998	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208407_100620712	F041433	GAG	MKKNQKSGKMTQSEFNKLSKALDYMAKDVMKSKGPEYTQEDKDVLANFKNTAVRLNTTELKVWGAFFDKQISSIYAHLNNVNLKKAETIESRFVDIINYCHLGLALFKERIR
Ga0208407_100620714	F028516	N/A	LHKNSNRYAISIQGIVKTLKNKRYYNELTIGEVKQIRAFGDVMSTDILWGESMFNDLNK
Ga0208407_10062076	F100998	N/A	MNLDNKIKQLHKTFEIRAEIADMMWEIDRLRDVELDYVSGEEYEKASMILEQQKRYKRLIKNREKKLKEYQKDI