Scaffold Ga0208407_1001277

Overview

Basic Information

• Taxon OID: 3300026257
• Scaffold ID: Ga0208407_1001277
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11561
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010475	Metagenome	303	Y
F095616	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208407_10012771	F010475	AGGAG	MISFIIPFSTIEKDKFLNLNEKEQLWEENDSANIIYSTIKTIKNINSLKCEKEIILVDNSHTWPKMDLPNVRVIKGWQALPVEELEKIPEYMNHRDIQASLDNLGCLTMWVSMAFHLGTQEAKGDYIVLQHNDTFYHQDCIDEMIEHMDKEELEYISVDNKKIWISTYLLNRDFLDKYIKEYSQQPVSIRPENGGYVKTKKLGFADAYFFLCKRKFFDNYNIDWYYGDTNHGATIYCLYNDLKYLHLGPYYDNPNWETNDTLHTYYYKDKPFLTHLKGGF
Ga0208407_100127712	F095616	N/A	KKMWYDRLRDRSKFDGDFKVVQSEYPYQHKLKLKESLPLDQTYEAKAWDWMVKNLEPSEKVLFWDVGIKEYDLSYIEPIKWHKSEYEQIIDREMRRKSKVTEHDFF