Basic Information | |
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Taxon OID | 3300026257 Open in IMG/M |
Scaffold ID | Ga0208407_1000150 Open in IMG/M |
Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 31602 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (87.80%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008210 | Metagenome / Metatranscriptome | 337 | Y |
F066837 | Metagenome / Metatranscriptome | 126 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208407_10001505 | F008210 | AGGA | MAVTVNNLKLTQVQGVVSVRGTAATGTIALATTLKKSTETQSSPAVNIKGLHWTLSSGASAKVQRNSVVLYELLENGSLDMYGYVDNSENTSDIEVVIAGGNGGTVIVDCAKVSGYGSQQHQDAPLDTDDAGAVYDGGSLG |
Ga0208407_10001507 | F066837 | GGAG | MAEDRTKEVNDFVSDILAGNSAEAQEKFNDQMASRAGEALDDLKASQAQDVFNKHVVDPNMEPQGVSLEDSLVDIDTTTGRPVGETNEDI |
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