Scaffold Ga0208522_1012484

Overview

Basic Information

• Taxon OID: 3300026254
• Scaffold ID: Ga0208522_1012484
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3786
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035334	Metagenome / Metatranscriptome	172	Y
F048555	Metagenome	148	N
F049935	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208522_10124841	F035334	N/A	MMQEHNTYKDVPIEIIKRFVLNKINELDEVQLTRVYELISNNTCLHKAKDNCINILVNKEHNW
Ga0208522_10124847	F049935	N/A	MQTDIDFEYWDAQIKHFISIFQSDDASRADKKEAKTHLTEIQSRLKRDVKDLNKYIKELESEL
Ga0208522_10124848	F048555	N/A	MKSVTITVGDYDLEVIDQIFENESNFSPNDPRDELMIEVMRQVKDNPKIDLGADEVAEYEKAKTRFSKNLGADGKQVVSRKGQYLSPEEVGLT