Scaffold Ga0208879_1077825

Overview

Basic Information

• Taxon OID: 3300026253
• Scaffold ID: Ga0208879_1077825
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1485
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006865	Metagenome / Metatranscriptome	363	Y
F013774	Metagenome / Metatranscriptome	268	Y
F029469	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208879_10778253	F013774	AGG	LNEKLLELKRKKLQRQILYLRSELEETTFIFQDCLIEFEGEFREYFKDKPTEGQKKVTTDPPEFNIPREDVNVVFRMIAQKTHPDKLVKEDTLSSTYKEKVDMYKEALGSVDNKDWSRVIEIAMELGIDVSDVKSDDSDYLNESIKGLTSKIKELQSTYAWIWYHTDDKKQAKQMILQSLGLSDK
Ga0208879_10778254	F029469	AGGAG	MSDKPEHTIYFREIIRKLKEMDNEFHKNPKPDVYSESGERIGLMELPFPPEMFERLSSDEKETLYIWLNRRNMPQA
Ga0208879_10778255	F006865	N/A	MGKINKIIKIEDVLYECLGAMSVKSSEIEGTEYWKERWGADTVLRNGNDYYYCRTIIDAEFEDI