NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208879_1075359

Scaffold Ga0208879_1075359


Overview

Basic Information
Taxon OID3300026253 Open in IMG/M
Scaffold IDGa0208879_1075359 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1519
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029900Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0208879_10753592F029900AGGAMNRVVRLLLIGMVSILSAQTATIKNSIIGYTTLGDTVSFDKPYLWSFIKSDDSKWMASIFVEAPWSRESVYVEELFYKPYSDKFTIGLGRQAIPFGSNVPYLDLTRGDKFTYQTPTVNDVGLLYFGDGVSVYGGVGKWFLETYYGSDIENGYDGLTTARLSYEVGNVHFVGVSLDNQERQALDVSGYSKYVDYVTEFREDYQWGRAIVKTGKYGLSLLAGFESDKEKTQGLYGVVWQYGESNRFLSVELSGEGDVRVKMYYGFNLNIGKENE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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