NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208879_1063992

Scaffold Ga0208879_1063992


Overview

Basic Information
Taxon OID3300026253 Open in IMG/M
Scaffold IDGa0208879_1063992 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1700
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013943Metagenome267Y
F030240Metagenome / Metatranscriptome186Y
F070216Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0208879_10639921F070216AGGAMKYLWILLLSIPLFGQTTYTEAEALEMIKQRDAQWESKLGKLQDIDRVKTIQISQYEDLVKELEDQ
Ga0208879_10639922F030240AGGAGMAISEGVGIAGRSKPTERQLGEYNGITKVLADTTVAFTGSNAGAGFICEVVTNVVIHGSGGGTIPGTSLTADTLYPIGVSKVVIGNAGIVYVLHR
Ga0208879_10639925F013943N/AYIGPASLTRGMQQIDFPASDNIYGGPDSLNNERRARRDAGKLYRYLSDPDGHSEIKANELRDDTPPLSPKQRMYGIHGFHRKQEYTIPPESANFYSTSETLIKPTTPPEGSVSGGIPATPEPGSKEMGSASGYRQAQKGGESIFAGNKKLWGKWKDHRIGSKVDGREWKGGKLVDLLPKGVK
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