Scaffold Ga0208879_1038204

Overview

Basic Information

• Taxon OID: 3300026253
• Scaffold ID: Ga0208879_1038204
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2442
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004418	Metagenome / Metatranscriptome	439	Y
F024128	Metagenome	207	Y
F105352	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208879_10382041	F024128	N/A	ISIPEKYIKPSLIDNLKYINDTVSHIEINRIYGAGDIMYQVIAKAVTMNVVTGEKAFVTWAVQEAADLETAVQKAKDELQNRIVVGMPVFHYASPDENIKNITEY
Ga0208879_103820410	F004418	GAG	MKIKYNTISNWLKDDWKNNRFRLFCETIGSLCFIGIYVLMAWYGESVSIATIFGIQIIGSSLHIINAWLRNSVNLLMLNIIVITIAVLGI
Ga0208879_10382049	F105352	GGAG	MKKNYKLEIPRSQFNRIADAFEQQVFDVNGYDVYKDTVTFSVTEKQRLWFAKYAIPNTKIKWKGKLKTNPYNWICQMFLSHEIEKYQIK