Scaffold Ga0208879_1022343

Overview

Basic Information

• Taxon OID: 3300026253
• Scaffold ID: Ga0208879_1022343
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3581
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005832	Metagenome / Metatranscriptome	389	Y
F028315	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208879_10223431	F028315	N/A	TTGNITETIVNASIPPAAAARETLALFGDINFNSTVGSVNLDCGRIPLTPGGTGLLSSLALTPSGISMSSLVAVATFDLGGSGIDLKYLGGLAAISMSASGIELKYGASSITVGPAGVTIKGVLITTEASGINTVKGSLVKLN
Ga0208879_10223434	F005832	N/A	VPQQLWWGDNVSKEGIWQDSDGMKDSEMVEKWTKTLHTVEYAVEQLKHQKTALMKKKEDIVNSKENNNG