Scaffold Ga0209722_1025368

Overview

Basic Information

• Taxon OID: 3300026252
• Scaffold ID: Ga0209722_1025368
• Source Dataset Name: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C12 SIP DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2376
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location

• Location Name: Washington, USA
• Coordinates
  • Lat. (^o): 47.6525
  • Long. (^o): -122.3049

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209722_10253683	F003987	GGAGG	VIPALPCGTFSDSDTPAGAFYVAAFEEGDTPHHVGEYRIETVIRALEALQACGYDDVEIGSIFAPDPEHVHLLLIGLDGEARFGDRQIGCVAVLPVGVD
Ga0209722_10253685	F004383	N/A	GGGLMPADENLLERAFMARIRADEHREALAALQQEFDERPDVIDLKRRIERCEEERRQCIEQAKAAGITKQGSFRLKVRTRKTRTVIPERFFARFGAEAFVRCSTVAIGKAEALLGKGTFDDCCEVAVKDLGATVEYERPEAGE